Cellpose

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Cellpose is an AI tool for cellular segmentation that allows users to upload image files and generate outlines of cells. It also provides flow images showing cell movement.

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At a glance

Pricing

Open Source

Free tier

Yes

API

Skill level

Technical

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About

What is Cellpose?

Cellpose is a generalist AI algorithm designed for cellular segmentation, applicable across various cell types and imaging modalities. Users can upload image files such as PNG, JPG, or TIF, and the application will process them to generate precise outlines of cells. Beyond static segmentation, Cellpose also provides flow images, which are useful for visualizing and analyzing cell movement. This tool is built using Gradio and is available under the BSD-3-Clause-Clear license, making it accessible for a wide range of research and analytical purposes in biology and related fields.

Best used for

Ideal for data scientists and developers who need to accurately segment cells in biological images, analyze cell morphology, and track cell movement. Especially valuable for researchers working with various cell types and imaging modalities who require a robust and generalist segmentation solution.

Common actions

segment cells

analyze images

track cell movement

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Capabilities

Key features

Upload image files
Generate cell outlines
Provide flow images
Generalist algorithm

Target Audience

data scientistdeveloper

Integrations

Not yet documented

Pricing & Plans

Open Source

Free

FAQs

What types of image files does Cellpose support for segmentation?

Cellpose supports a variety of common image file formats for segmentation, including PNG, JPG, and TIF. Users can upload these files directly to the application to generate cell outlines and flow images for analysis.

Can Cellpose be used for different cell types and imaging techniques?

Yes, Cellpose is designed as a generalist algorithm, meaning it is applicable to various cell types and imaging modalities. This makes it a versatile tool for researchers across different biological disciplines requiring cellular segmentation.

What kind of output does Cellpose provide in addition to cell outlines?

Beyond generating outlines of segmented cells, Cellpose also provides flow images. These flow images are particularly useful for visualizing and understanding cell movement, offering an additional layer of analysis for dynamic biological processes.

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Research & Education › Scientific Computing

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